Коби Моран-Гилад

Научные публикации

• Reduction in Serum Carotenoid Levels Following One Anastomosis Gastric Bypass
• In vivo selection of carbapenem resistance during persistent Klebsiella pneumoniae sequence type 395 bloodstream infection due to OmpK36 deletion
• Invasive infections caused by the recently described species Enterococcus innesii
• Ensuring accuracy in the development and application of nucleic acid amplification tests (NAATs) for infectious disease
• National epidemiology of culture-confirmed brucellosis in Israel, 2004-2022
• Cognitive behavioral and mindfulness with daily exercise intervention is associated with changes in intestinal microbial taxa and systemic inflammation in patients with Crohn's disease
• In-depth characterization of multidrug-resistant NDM-1 and KPC-3 co-producing Klebsiella pneumoniae bloodstream isolates from Italian hospital patients
• Evaluation of an automated feedback intervention to improve antibiotic prescribing among primary care physicians (OPEN Stewardship): a multinational controlled interrupted time-series study
• An Evaluation of the Impact of an OPEN Stewardship Generated Feedback Intervention on Antibiotic Prescribing among Primary Care Veterinarians in Canada and Israel
• Helicobacter cinaedi Bacteremia in Children: A Case Report and Literature Review
• Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions
• Expert guidance on target product profile development for AMR diagnostic tests
• Vulnerability of pangolin SARS-CoV-2 lineage assignment to adversarial attack
• Evaluation of a novel surface-coating formulation with time-extended antimicrobial activity for healthcare environment disinfection
• The impact of the COVID-19 pandemic on pediatric acute conjunctivitis disease trends
• Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis
• Temporal Changes in the Skin Microbiome of Epidermolysis Bullosa Patients following the Application of Wound Dressings
• Challenging diagnosis of Mycolicibacterium cosmeticum/canariasense infection: A case report and literature review
• Fecal microbiota of the synanthropic golden jackal (Canis aureus)
• Metagenomic sequencing for investigation of a national keratoconjunctivitis outbreak, Israel, 2022
• If You're Not Confused, You're Not Paying Attention: Ochrobactrum Is Not Brucella
• A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia
• Trends in the Epidemiology of Non-Typhoidal Salmonellosis in Israel between 2010 and 2021
• TRAF3 suppression encourages B cell recruitment and prolongs survival of microbiome-intact mice with ovarian cancer
• Public and animal health risks associated with spillover of Brucella melitensis into dairy farms
• Author Correction: Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
• LMAS: evaluating metagenomic short de novo assembly methods through defined communities
• Hybrid Hydrogels of FKF-Peptide Assemblies and Gelatin for Sustained Antimicrobial Activity
• Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
• Prevalence and Characteristics of Carriage of Neisseria meningitidis Among Young Israeli Adults
• Phenotypic correlates of the working dog microbiome
• Monkeypox: another test for PCR
• Fecal Microbiome Features Associated with Extended-Spectrum β-Lactamase-Producing Enterobacterales Carriage in Dairy Heifers
• Quality of MALDI-TOF mass spectra in routine diagnostics: results from an international external quality assessment including 36 laboratories from 12 countries using 47 challenging bacterial strains
• Prevalence of Antibiotic Tolerance and Risk for Reinfection Among Escherichia coli Bloodstream Isolates: A Prospective Cohort Study
• Escape room-the next generation of problem-based learning?
• Long-Read Sequencing and Hybrid Assembly for Genomic Analysis of Clinical Brucella melitensis Isolates
• Genomic Epidemiology of Clinical Brucella melitensis Isolates from Southern Israel
• The association between natural drinking water sources and the emergence of zoonotic leptospirosis among grazing beef cattle herds during a human outbreak
• The Effects of One Anastomosis Gastric Bypass Surgery on the Gastrointestinal Tract
• Measuring diagnostic performance of COVID-19 tests: lessons for the next pandemic
• External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories
• The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19
• Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study
• City-level SARS-CoV-2 sewage surveillance
• Inferring Numbers of Wild Poliovirus Excretors Using Quantitative Environmental Surveillance
• Author Correction: Setting a baseline for global urban virome surveillance in sewage
• Comparing the Antimicrobial Effect of Silver Ion-Coated Silicone and Gentamicin-Irrigated Silicone Sheets from Breast Implant Material
• Brucellosis Outbreak Traced to Commercially Sold Camel Milk through Whole-Genome Sequencing, Israel
• An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities
• Direct Fluconazole Disk Susceptibility Testing for Candida glabrata-Positive Blood Cultures
• COVID-19 new diagnostics development: novel detection methods for SARS-CoV-2 infection and considerations for their translation to routine use
• Legionella antibiotic susceptibility testing: is it time for international standardization and evidence-based guidance?
• Assembly of cationic and amphiphilic β-sheet FKF tripeptide confers antibacterial activity
• Unraveling antimicrobial resistance in Helicobacter pylori: Global resistome meets global phylogeny
• Evaluation of an OPEN Stewardship generated feedback intervention to improve antibiotic prescribing among primary care veterinarians in Ontario, Canada and Israel: protocol for evaluating usability and an interrupted time-series analysis
• Evaluation of an automated feedback intervention to improve antimicrobial prescribing among primary care physicians (OPEN Stewardship): protocol for an interrupted time-series and usability analysis in Ontario, Canada and Southern Israel
• Genomic Analysis of Antimicrobial Resistance Genotype-to-Phenotype Agreement in Helicobacter pylori
• WGS-Based Prediction and Analysis of Antimicrobial Resistance in Campylobacter jejuni Isolates From Israel
• Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2
• The Clinical and Molecular Epidemiology of Noncarbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae: A Case-Case-Control Matched Analysis
• minMLST: machine learning for optimization of bacterial strain typing
• Scientometric trends for coronaviruses and other emerging viral infections
• Setting a baseline for global urban virome surveillance in sewage
• A Snapshot of the Prevalence and Molecular Diversity of Legionella pneumophila in the Water Systems of Israeli Hotels
• The rise of one anastomosis gastric bypass: insights from surgeons and dietitians
• Genomic Characterization of Antimicrobial Resistance, Virulence, and Phylogeny of the Genus Ochrobactrum
• Cyber security threats in the microbial genomics era: implications for public health
• Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study
• A real-time PCR for specific detection of the Legionella pneumophila serogroup 1 ST1 complex
• ESCMID/ESGMD postgraduate technical workshop on diagnostic microbiology
• Operational models and criteria for incorporating microbial whole genome sequencing in hospital microbiology - A systematic literature review
• Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
• The successful uptake and sustainability of rapid infectious disease and antimicrobial resistance point-of-care testing requires a complex 'mix-and-match' implementation package
• Air-conditioner cooling towers as complex reservoirs and continuous source of Legionella pneumophila infection evidenced by a genomic analysis study in 2017, Switzerland
• How do advanced diagnostics support public health policy development?
• Diagnostic stewardship: are we using the right term?
• Semi-Automated Visualization and ANalysis of Trends: A "SAVANT" for Facilitating Antimicrobial Stewardship Using Antistaphylococcal Resistance and Consumption as a Prototype
• Ecological dynamics of the vaginal microbiome in relation to health and disease
• Genomic Epidemiology of Campylobacter jejuni Transmission in Israel
• Developmental roadmap for antimicrobial susceptibility testing systems
• Outbreak of human leptospirosis linked to contaminated water bodies in Northern Israel, June to August 2018
• The association between gestational age and otitis media during childhood: a population-based cohort analysis
• ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab
• Bacterial next generation sequencing (NGS) made easy
• chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
• Control of a Mycoplasma pneumoniae Outbreak in an Institutional Setting Using Azithromycin Prophylaxis
• Therapeutic Management of Pseudomonas aeruginosa Bloodstream Infection Non-Susceptible to Carbapenems but Susceptible to "Old" Cephalosporins and/or to Penicillins
• A primer on microbial bioinformatics for nonbioinformaticians
• Next-generation sequencing applications in clinical bacteriology
• Epidemiological information is key when interpreting whole genome sequence data - lessons learned from a large Legionella pneumophila outbreak in Warstein, Germany, 2013
• Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology
• Biphasic cuirass ventilation is better than bag-valve mask ventilation for resuscitation following organophosphate poisoning
• Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery
• Microbial Metagenomics Mock Scenario-based Sample Simulation (M₃S₃)
• ESCMID postgraduate education course: applications of MALDI-TOF mass spectrometry in clinical microbiology
• Whole genome sequencing (WGS) for food-borne pathogen surveillance and control - taking the pulse
• Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting
• Primary gastric lymphoma in a soldier presenting as acute gastrointestinal bleeding
• How is post-mortem microbiology appraised by pathologists? Results from a practice survey conducted by ESGFOR
• A bioinformatics tool for ensuring the backwards compatibility of Legionella pneumophila typing in the genomic era
• Public health response to the silent reintroduction of wild poliovirus to Israel, 2013-2014
• Whole-genome sequencing and comparative genomic analysis of Bordetella pertussis isolates from the 2007-2008 epidemic in Israel
• Molecular epidemiology of Campylobacter jejuni infection in Israel-a nationwide study
• Erratum to: Modeling the spread of polio in an IPV-vaccinated population: lessons learned from the 2013 silent outbreak in southern Israel
• Modeling the spread of polio in an IPV-vaccinated population: lessons learned from the 2013 silent outbreak in southern Israel
• Complex clinical and microbiological effects on Legionnaires' disease outcone; A retrospective cohort study
• The Israeli public health response to wild poliovirus importation
• Design and application of a core genome multilocus sequence typing scheme for investigation of Legionnaires' disease incidents
• Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities
• Field study of fecal excretion as a decision support tool in response to silent reintroduction of wild-type poliovirus 1 into Israel
• Genetic analysis and characterization of wild poliovirus type 1 during sustained transmission in a population with >95% vaccine coverage, Israel 2013
• Laboratory challenges in response to silent introduction and sustained transmission of wild poliovirus type 1 in Israel during 2013
• Harmonizing influenza primary-care surveillance in the United Kingdom: piloting two methods to assess the timing and intensity of the seasonal epidemic across several general practice-based surveillance schemes
• Laboratory evaluation of different agar media for isolation of carbapenem-resistant Acinetobacter spp
• Silent reintroduction of wild-type poliovirus to Israel, 2013 - risk communication challenges in an argumentative atmosphere
• Intensified environmental surveillance supporting the response to wild poliovirus type 1 silent circulation in Israel, 2013
• Molecular epidemiology of silent introduction and sustained transmission of wild poliovirus type 1, Israel, 2013
• Development and validation of a real time quantitative reverse transcription-polymerase chain reaction (qRT-PCR) assay for investigation of wild poliovirus type 1-South Asian (SOAS) strain reintroduced into Israel, 2013 to 2014
• Increased incidence of Campylobacter spp. infection and high rates among children, Israel
• Molecular epidemiology of Legionnaires' disease in Israel
• Postexposure prophylaxis of tick-borne relapsing fever: lessons learned from recent outbreaks in Israel
• Clinical and microbiological characteristics of Bartholin gland abscesses
• Insidious reintroduction of wild poliovirus into Israel, 2013
• Guidance on the development and validation of diagnostic tests that depend on nucleic acid amplification and detection
• Humidifier-associated paediatric Legionnaires' disease, Israel, February 2012
• Microbiological aspects of public health planning and preparedness for the 2012 Olympic Games
• Laboratory evaluation of the ESwab transport system for the recovery of carbapenem-resistant Acinetobacter baumannii
• Laboratory evaluation of the CHROMagar KPC medium for identification of carbapenem-nonsusceptible Enterobacteriaceae
• Laboratory and clinical evaluation of screening agar plates for detection of carbapenem-resistant Enterobacteriaceae from surveillance rectal swabs
• Continued emergence and changing epidemiology of oseltamivir-resistant influenza A(H1N1)2009 virus, United Kingdom, winter 2010/11